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Journal : Jurnal AgroBiogen

Phylogenetic and Maturity Analyses of Sixty Soybean Genotypes Used for DNA Marker Development of Early Maturity Quantitative Trait Loci in Soybean Tasma, I Made; Satyawan, Dani; Warsun, Ahmad; Yunus, Muhamad; Santosa, Budi
Jurnal AgroBiogen Vol 7, No 1 (2011): Jurnal AgroBiogen
Publisher : Jurnal AgroBiogen

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Abstract

The Indonesian soybean productivity is still very low with the national average of 1.3 t/ha. One means to improve national soybean productivity is by manipulating harvest index by cultivating very early maturing soybean cultivars. Development of early maturing soybean cultivars can be expedited by using marker-aided selection. The objective of this study was to select parental lines having contrasted maturity traits and selected parents must be genetically distance. The parents then were used to develop F2 populations for detecting early maturity QTL in soybean. Maturity tests of 60 soybean genotypes were conducted at two locations, Cikeumeuh (Bogor) and Pacet (Cianjur) using a randomized block design with three replications. Genomic DNA of the 60 genotypes were analyzed using 18 SSR markers and genetic relationship was constructed using the Unweighted Pair-Group Method Arithmatic through Numerical Taxonomy and Multivariate System program version 2.1-pc. Results showed that the 60 genotypes demonstrated normal distribution in both locations for days to R1 (32-48d), days to R3 (35-55d), days to R7 (75-92d), and days to R8 (78-99d). Four early maturing genotypes and three late genotypes were obtained. Total SSR alleles observed were 237 with average allele per locus of 12.6 (3-29), and average PIC value of 0.78 (0.55-0.89). Genetic similarity among genotypes ranges from 74.8-95%. At similarity level 77% divided the genotypes into six clusters (the four selected early maturing genotypes located in clusters III and IV, while the three late genotypes located in cluster II). Based on maturity data, pubescent color, and phygenetic analysis seven parents were selected (four early maturing genotypes B1430, B2973, B3611, B4433 and three late genotypes B1635, B1658, and B3570). Twelve F2 populations were developed with the aid of SSR markers Satt300 dan Satt516. Two of the populations will be used to develop DNA markers for earliness in soybean.
Phylogenetic and Maturity Analyses of Sixty Soybean Genotypes Used for DNA Marker Development of Early Maturity Quantitative Trait Loci in Soybean Tasma, I Made; Satyawan, Dani; Warsun, Ahmad; Yunus, Muhamad; Santosa, Budi
Jurnal AgroBiogen Vol 7, No 1 (2011): April
Publisher : Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian

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Abstract

Phylogenetic and Maturity Analyses of Sixty SoybeanGenotypes Used for DNA Marker Development of EarlyMaturity Quantitative Trait Loci in Soybean. I MadeTasma, Dani Satyawan, Ahmad Warsun, MuhamadYunus, and Budi Santosa. The Indonesian soybeanproductivity is still very low with the national average of 1.3t/ha. One means to improve national soybean productivity isby manipulating harvest index by cultivating very earlymaturing soybean cultivars. Development of early maturingsoybean cultivars can be expedited by using marker-aidedselection. The objective of this study was to select parentallines having contrasted maturity traits and selected parentsmust be genetically distance. The parents then were used todevelop F2 populations for detecting early maturity QTL insoybean. Maturity tests of 60 soybean genotypes wereconducted at two locations, Cikeumeuh (Bogor) and Pacet(Cianjur) using a randomized block design with threereplications. Genomic DNA of the 60 genotypes wereanalyzed using 18 SSR markers and genetic relationship wasconstructed using the Unweighted Pair-Group MethodArithmatic through Numerical Taxonomy and MultivariateSystem program version 2.1-pc. Results showed that the 60genotypes demonstrated normal distribution in bothlocations for days to R1 (32-48d), days to R3 (35-55d), days toR7 (75-92d), and days to R8 (78-99d). Four early maturinggenotypes and three late genotypes were obtained. TotalSSR alleles observed were 237 with average allele per locusof 12.6 (3-29), and average PIC value of 0.78 (0.55-0.89).Genetic similarity among genotypes ranges from 74.8-95%.At similarity level 77% divided the genotypes into six clusters(the four selected early maturing genotypes located inclusters III and IV, while the three late genotypes located incluster II). Based on maturity data, pubescent color, andphygenetic analysis seven parents were selected (four earlymaturing genotypes B1430, B2973, B3611, B4433 and threelate genotypes B1635, B1658, and B3570). Twelve F2populations were developed with the aid of SSR markersSatt300 dan Satt516. Two of the populations will be used todevelop DNA markers for earliness in soybean.
Co-Authors Abdurrahman, Ahmad Fauzan Abdurrahman, Ahmad Fauzan Abiyoga, Gerald Arsa Adhiyaksa Ade Lia D. Safitri Adrianus Yosep Ago, Adrianus Yosep Agus Sasmito Aribowo Agustin Rahmawati Ahmad Juni Haryanto, Fandi Ahmad Warsun Ali Ridho Barakbah Ana Hida, Yeni Danga Andri S, Andri Andri Sukeksi Anin, Vitry Agrida Anindita, Cipta Ayu Anissa Wulandari, Anissa Antariksa Antariksa Ari Yanuar Ridwan, Ari Yanuar Ari Yanuar, Ari Arief Kurniawan Bambang Utoyo Boli Samun, Thomas Aquino Boyke Frahmana, Boyke Budi Sulistyo Budianto, Anwar Budiyono Budiyono Buru, Romika Jibrael Choirida, Saskia Dyah Dalin, Yulianus Dani Satyawan Das Neves, Lucia Ximenes De Jesus, Julio Rodrigues Debby Rahmawati Deniswara, Cindy Dessyanto Boedi P Dessyanto Boedi Prasetyo Destaria Madya Verawaty, Destaria Madya Deswalantri, Deswalantri Dida Diah Damayanti Didi Setya, Didi Didik Sumanto Dinda Sekar Putri, Dinda Sekar Djoko Legono Dwi Aries Himawanto Dwi Sulistyoningsih Dwiska Aini Nurrahma, Dwiska Aini Dyah, Saskia Eka Fitasari Eka Puji Hastuti, Eka Puji Ekawati, Fitri Eko Prasetyo Nugroho Endang Purwaningsih Erik Kurniawan, Erik Ethica, Stalls Norma Fajar Kurnia Fani Yayuk Supomo Fatwa Tentama Fauzia Hulopi Frumen, Maksimus Gesi, Rofinus Gita Purnama Sari, Gita Purnama Gunarto Gunarto Hairurraziqin Hairurraziqin, Hairurraziqin Hananta, Yan’s Dianaga Hani Purnamasari, Hani Hariyadi Hariyadi Hariyana, Bambang Helmi Helmi Hengky Novarianto Henna Ria Sunoko, Henna Ria Henna Rya Sunoko Henna Rya Sunoko Herry Sofyan Hertanto Wahyu Subagio Hertanto Wahyu Subagyo Heru Cahya Rustamaji Hidayat, Wahyu Sunan Horna, Horna Hosang, Meldy Husada, Hendrianto I Ketut Eddy P, I Ketut I Ketut Eddy P. I Made Tasma Ial Irwan Arahman, Ial Irwan Indra Perwira, Rifki Irfan Suliansyah Ismail Maskromo Ismawati Ismawati Janggakadu, Arnold Hina Jerrystama Abipradja, Jerrystama Juwairiah Juwairiah Juwita Ratna Dewi Kale, Barnese Nelce Kamin, Yusri bin Karuniawati, Fenty Kgs Ahmadi Khoiriyatuinnisa, Khoiriyatunnisa Kisdjamiatun RMD Kumala, Sella Candra Indah Laba, Ferdinandus Laga Bahi, Titus Kobo Lanang, Fransiskus Limahekin, Donatus Aribeda Lisa Dwi Wulandari Lisyani S Lisyani Suratmo, Lisyani Maharani, Dias Mandasari, Fika Mangaras Yanu Florestiyanto, Mangaras Yanu Markus Priharjanto, Markus Martin Simanjuntak Martins, Arcanjo Mawardi, Sukmawati Maya Putri Arumsari, Maya Putri Mema Ma?u, Damianus Merkurius Memet, Antonius Mokmin, Mokmin Mona Nabilah, Mona Muhamad Yunus Muhammad Riski, Muhammad Muljawan, Rikawanto Eko Nanda, Angelica Mega Ni Putu Aniek Mahayani, Ni Putu Aniek Niken Puruhita Ningsih, Teti Kusuma Njurumana, Yermias Yiwa Noverita Rochsitasari, Noverita Nugroho, Febri Satrio Nuruddin Nuruddin Nurul Qomariyah Nuryani Nuryani Ola, Ramdan Oliver Samuel Simanjuntak Panjang, Meha Tara Pereira, Gregorio Perwira, Rifki Petronius, Zakarias Magnus Pramono Sasongko Prasetyo, Muhammad Bagus Prasetyo, Nanda Isdian Prastiyanto, Muhammad Evy Primasari, Maria Purnadi, Purnadi Purnawan Purnawan Purnomo, Hendy Putra, Gregorius Guruh Handaya Putra, Ludfie Hardian Qosim, Muchamad Nur Ragil Saptaningtyas, Ragil Rahmat Adeputra, Rahmat Rahmawati, Atina Rahmawati, Atina Ranny Wahyu Ningrat Ratna Wulan Sari Ratomesang, Richardo Pelipus Boru Rejeki, VG. Sri Riangsari, M.F. Devita Rifki Indra Perwira Rifky Satya Wicaksono, Rifky Satya Rini Megawati Rio Aurachman, Rio Rizalditya, Putra Bintang Rozana Rozana, Rozana Rr. M.I. Retno Susilorini Rudi Theo Satrio, Rudi Theo Rusdiana, Endang Saja, Bernardus Bode Santosa, Joko Budi Sartini, Iis Sihombing, Ezra Siti Aisah Slamet Riyadi Soares, Rosalino De jesus Sofi Fauziah, Sofi Sofyan Cholid, Sofyan Solkhanuddin, Solkhan Sri Darmawati Sri Subanti Sugiyono Sugiyono Suhartono Suhartono SUHARYANTO SUHARYANTO Suliana, Gatut Suliana, Gatut Sumiyarti Sumiyarti, Sumiyarti Supriyadi Supriyadi Susilorini, Rr. M. I. Retno Susilorini, Rr.M.I Rretno Susilorini, Rr.M.I. Retno Tahta Alfina Tantalu , Lorine Tantalu, Lorine Tantalu, Lorine Tatty Ermin Taus, Dominika Sone Tiananda Widyarini Timba, Margaretha Kahi Titi Murniati Tri Kuat, Tri Tulalo, Meity Aneke Tulalo, Meity Aneke Umar Affandi Untung Sugiarti Veronika Veronika Waenah . . Wahon, David Dolu Aman Wahyu Ari Widiyastuti, Wahyu Ari Wahyu Mushollaeni Wardhana, Punto Aji Wijiati, Irma Wilis Kaswidjanti Wirawan Wirawan Wona, Yosevina Ximenes Guterres, Anapula Do Rosario Yan Indra Putra, Yan Indra Yanuar, Masnia Mahardi Yosua Yosua Yoyon K. Suprapto Yoyon K. Suprapto Yuhefizar Yuhefizar Yurinda Amalia, Yurinda Zela Ubaidillah